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genome sequencing相关文献:
The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data.
McKenna A, Hanna M, Banks E, Sivachenko A, Cibulskis K, Kernytsky A, Garimella K, Altshuler D, Gabriel S, Daly M, DePristo MA.
Genome Res. 2010 Sep;20(9):1297-303. doi: 10.1101/gr.107524.110. Epub 2010 Jul 19.
PMID:20644199
Genome sequencing guide: An introductory toolbox to whole-genome analysis methods.
Burian AN, Zhao W, Lo TW, Thurtle-Schmidt DM.
Biochem Mol Biol Educ. 2021 Sep;49(5):815-825. doi: 10.1002/bmb.21561. Epub 2021 Aug 11.
PMID:34378845
Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype.
Kim D, Paggi JM, Park C, Bennett C, Salzberg SL.
Nat Biotechnol. 2019 Aug;37(8):907-915. doi: 10.1038/s41587-019-0201-4. Epub 2019 Aug 2.
PMID:31375807
Analyzing Modern Biomolecules: The Revolution of Nucleic-Acid Sequencing - Review.
Dorado G, Gálvez S, Rosales TE, Vásquez VF, Hernández P.
Biomolecules. 2021 Jul 28;11(8):1111. doi: 10.3390/biom11081111.
PMID:34439777
The Sequence Alignment/Map format and SAMtools.
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R; 1000 Genome Project Data Processing Subgroup.
Bioinformatics. 2009 Aug 15;25(16):2078-9. doi: 10.1093/bioinformatics/btp352. Epub 2009 Jun 8.
PMID:19505943
Advances in whole genome sequencing technology.
Zhao J, Grant SF.
Curr Pharm Biotechnol. 2011 Feb 1;12(2):293-305. doi: 10.2174/138920111794295729.
PMID:21050163
Complete chemical synthesis, assembly, and cloning of a Mycoplasma genitalium genome.
Gibson DG, Benders GA, Andrews-Pfannkoch C, Denisova EA, Baden-Tillson H, Zaveri J, Stockwell TB, Brownley A, Thomas DW, Algire MA, Merryman C, Young L, Noskov VN, Glass JI, Venter JC, Hutchison CA 3rd, Smith HO.
Science. 2008 Feb 29;319(5867):1215-20. doi: 10.1126/science.1151721. Epub 2008 Jan 24.
PMID:18218864
Fast and accurate long-read alignment with Burrows-Wheeler transform.
Li H, Durbin R.
Bioinformatics. 2010 Mar 1;26(5):589-95. doi: 10.1093/bioinformatics/btp698. Epub 2010 Jan 15.
PMID:20080505
Advancing regulatory variant effect prediction with AlphaGenome.
Avsec Ž, Latysheva N, Cheng J, Novati G, Taylor KR, Ward T, Bycroft C, Nicolaisen L, Arvaniti E, Pan J, Thomas R, Dutordoir V, Perino M, De S, Karollus A, Gayoso A, Sargeant T, Mottram A, Wong LH, Drotár P, Kosiorek A, Senior A, Tanburn R, Applebaum T, Basu S, Hassabis D, Kohli P.
Nature. 2026 Jan;649(8099):1206-1218. doi: 10.1038/s41586-025-10014-0. Epub 2026 Jan 28.
PMID:41606153
Ten years of bacterial genome sequencing: comparative-genomics-based discoveries.
Binnewies TT, Motro Y, Hallin PF, Lund O, Dunn D, La T, Hampson DJ, Bellgard M, Wassenaar TM, Ussery DW.
Funct Integr Genomics. 2006 Jul;6(3):165-85. doi: 10.1007/s10142-006-0027-2. Epub 2006 May 12.
PMID:16773396
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